chalmers_gem_metabolites: Metabolites from the Chalmers SysBio GEM (Wang et al., 2021)

In saezlab/OmnipathR: OmniPath web service client and more

Metabolites from the Chalmers SysBio GEM (Wang et al., 2021)

Description

Metabolites from the Chalmers SysBio GEM (Wang et al., 2021)

Usage

chalmers_gem_metabolites(organism = "Human")

Arguments

organism

Character or integer: an organism (taxon) identifier. Supported taxons are 9606 (Homo sapiens), 10090 (Mus musculus), 10116 (Rattus norvegicu), 7955 (Danio rerio), 7227 (Drosophila melanogaster) and 6239 (Caenorhabditis elegans).

Value

Data frame of metabolite identifiers.

References

Wang H, Robinson JL, Kocabas P, Gustafsson J, Anton M, Cholley PE, Huang S, Gobom J, Svensson T, Uhlen M, Zetterberg H, Nielsen J. Genome-scale metabolic network reconstruction of model animals as a platform for translational research. Proc Natl Acad Sci U S A. 2021 Jul 27;118(30):e2102344118. doi: \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1073/pnas.2102344118")}.

See Also

• chalmers_gem_network

• chalmers_gem_reactions

• chalmers_gem

• chalmers_gem_raw

• chalmers_gem_id_mapping_table

• cosmos_pkn

Examples

chalmers_gem_metabolites()

saezlab/OmnipathR documentation built on Nov. 10, 2024, 11:02 p.m.