enzsub_graph: Enzyme-substrate graph
In saezlab/OmnipathR: OmniPath web service client and more
enzsub_graph R Documentation
Enzyme-substrate graph
Description
Transforms the a data frame with enzyme-substrate relationships
(obtained by import_omnipath_enzsub) to an igraph
graph object.
Usage
enzsub_graph(enzsub)
Arguments
enzsub
Data frame created by import_omnipath_enzsub
Value
An igraph directed graph object.
See Also
import_omnipath_enzsub
giant_component
find_all_paths
Examples
enzsub <- import_omnipath_enzsub(resources = c('PhosphoSite', 'SIGNOR'))
enzsub_g <- enzsub_graph(enzsub = enzsub)
saezlab/OmnipathR documentation built on June 17, 2024, 2:24 a.m.
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| enzsub_graph | R Documentation |
Enzyme-substrate graph
Description
Transforms the a data frame with enzyme-substrate relationships
(obtained by import_omnipath_enzsub) to an igraph
graph object.
Usage
enzsub_graph(enzsub)
Arguments
enzsub |
Data frame created by |
Value
An igraph directed graph object.
See Also
import_omnipath_enzsubgiant_componentfind_all_paths
Examples
enzsub <- import_omnipath_enzsub(resources = c('PhosphoSite', 'SIGNOR'))
enzsub_g <- enzsub_graph(enzsub = enzsub)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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