chalmers_gem_id_mapping_table: Metabolite ID translation tables from Chalmers Sysbio

In saezlab/OmnipathR: OmniPath web service client and more

Metabolite ID translation tables from Chalmers Sysbio

Description

Metabolite ID translation tables from Chalmers Sysbio

Usage

chalmers_gem_id_mapping_table(to, from = "metabolicatlas", organism = "Human")

Arguments

to	Character: type of ID to translate to, either label used internally in this package, or a column name from "metabolites.tsv" distributed by Chalmers Sysbio. NSE is supported.
from	Character: type of ID to translate from, same format as "to".
organism	Character or integer: name or identifier of the organism. Supported taxons are 9606 (Homo sapiens), 10090 (Mus musculus), 10116 (Rattus norvegicu), 7955 (Danio rerio), 7227 (Drosophila melanogaster) and 6239 (Caenorhabditis elegans).

Value

Tibble with two columns, "From" and "To", with the corresponding ID types.

Examples

chalmers_gem_id_mapping_table('metabolicatlas', 'hmdb')

saezlab/OmnipathR documentation built on Oct. 16, 2024, 11:49 a.m.