bioplex_hct116_1: Downloads the BioPlex HCT116 version 1.0 interaction dataset

In saezlab/OmnipathR: OmniPath web service client and more

Downloads the BioPlex HCT116 version 1.0 interaction dataset

Description

This dataset contains ~71,000 interactions detected in HCT116 cells using 5,522 baits. More details at https://bioplex.hms.harvard.edu/interactions.php.

Usage

bioplex_hct116_1()

Value

Data frame (tibble) with interactions.

See Also

• bioplex1

• bioplex2

• bioplex3

• bioplex_all

Examples

bioplex_interactions <- bioplex_hct116_1()
nrow(bioplex_interactions)
# [1] 70966
colnames(bioplex_interactions)
# [1] "GeneA"         "GeneB"        "UniprotA"   "UniprotB"
# [5] "SymbolA"       "SymbolB"      "p_wrong"    "p_no_interaction"
# [9] "p_interaction"

saezlab/OmnipathR documentation built on April 12, 2024, 3:29 p.m.