chalmers_gem_reactions | R Documentation |
Reactions from the Chalmers SysBio GEM (Wang et al., 2021)
chalmers_gem_reactions(organism = "Human")
organism |
Character or integer: an organism (taxon) identifier. Supported taxons are 9606 (Homo sapiens), 10090 (Mus musculus), 10116 (Rattus norvegicu), 7955 (Danio rerio), 7227 (Drosophila melanogaster) and 6239 (Caenorhabditis elegans). |
Data frame of reaction identifiers.
Wang H, Robinson JL, Kocabas P, Gustafsson J, Anton M, Cholley PE, Huang S, Gobom J, Svensson T, Uhlen M, Zetterberg H, Nielsen J. Genome-scale metabolic network reconstruction of model animals as a platform for translational research. Proc Natl Acad Sci U S A. 2021 Jul 27;118(30):e2102344118. doi: \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1073/pnas.2102344118")}.
chalmers_gem_network
chalmers_gem_metabolites
chalmers_gem
chalmers_gem_raw
chalmers_gem_id_mapping_table
cosmos_pkn
chalmers_gem_reactions()
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