bioplex2: Downloads the BioPlex version 2.0 interaction dataset

In saezlab/OmnipathR: OmniPath web service client and more

Downloads the BioPlex version 2.0 interaction dataset

Description

This dataset contains ~56,000 interactions detected in HEK293T cells using 5,891 baits. More details at https://bioplex.hms.harvard.edu/interactions.php

Usage

bioplex2()

Value

Data frame (tibble) with interactions.

See Also

• bioplex1

• bioplex3

• bioplex_hct116_1

• bioplex_all

Examples

bioplex_interactions <- bioplex2()
nrow(bioplex_interactions)
# [1] 56553
colnames(bioplex_interactions)
# [1] "GeneA"         "GeneB"        "UniprotA"   "UniprotB"
# [5] "SymbolA"       "SymbolB"      "p_wrong"    "p_no_interaction"
# [9] "p_interaction"

saezlab/OmnipathR documentation built on Nov. 10, 2024, 11:02 p.m.