Files in satijalab/azimuth
A Shiny App Demonstrating a Query-Reference Mapping Algorithm for Single-Cell Data
.Rbuildignore
.dockerignore
.github/no-response.yml
.gitignore
DESCRIPTION
Dockerfile
LICENSE
NAMESPACE
NEWS.md
R/RcppExports.R
R/azimuth.R
R/generics.R
R/helpers.R
R/server.R
R/ui.R
R/zzz.R
README.Rmd
README.md
Rprofile.site
azimuth.Rproj
data-raw/json_config.R
docs/404.html
docs/LICENSE-text.html
docs/articles/index.html
docs/articles/run_azimuth_tutorial.html
docs/articles/run_azimuth_tutorial_files/figure-html/bm_feature_plots-1.png
docs/articles/run_azimuth_tutorial_files/figure-html/bm_plots-1.png
docs/articles/run_azimuth_tutorial_files/figure-html/pbmc_atac_dimplot-1.png
docs/articles/run_azimuth_tutorial_files/figure-html/pbmc_bcells-1.png
docs/articles/run_azimuth_tutorial_files/figure-html/pbmc_dimplot-1.png
docs/articles/run_azimuth_tutorial_files/figure-html/pbmc_dimplot_2-1.png
docs/articles/run_azimuth_tutorial_files/figure-html/pbmc_res1-1.png
docs/articles/run_azimuth_tutorial_files/figure-html/unnamed-chunk-3-1.png
docs/articles/run_azimuth_tutorial_files/figure-html/unnamed-chunk-3-2.png
docs/articles/run_azimuth_tutorial_files/figure-html/unnamed-chunk-3-3.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/AttachDeps.html
docs/reference/Azimuth-package.html
docs/reference/AzimuthApp.html
docs/reference/AzimuthData-class.html
docs/reference/AzimuthReference.html
docs/reference/AzimuthServer.html
docs/reference/CategoryTable.html
docs/reference/ConvertGeneNames.html
docs/reference/CreateAzimuthData.html
docs/reference/CreateColorMap.html
docs/reference/FilterFeatures.html
docs/reference/FormatDiffTime.html
docs/reference/GetCSS.html
docs/reference/GetColorMap.html
docs/reference/GetPlotRef.html
docs/reference/LoadFileInput.html
docs/reference/LoadH5AD.html
docs/reference/LoadReference.html
docs/reference/NNTransform.html
docs/reference/PlottableMetadataNames.html
docs/reference/ReferenceVersion.html
docs/reference/RenderDiffExp.html
docs/reference/Rplot001.png
docs/reference/RunAzimuth.html
docs/reference/SetColorMap.html
docs/reference/ValidateAzimuthReference.html
docs/reference/index.html
docs/sitemap.xml
inst/resources/config.json
inst/resources/template.R
inst/www/azimuth.css
man/AttachDeps.Rd
man/Azimuth-package.Rd
man/AzimuthApp.Rd
man/AzimuthBridgeReference.Rd
man/AzimuthData-class.Rd
man/AzimuthReference.Rd
man/AzimuthServer.Rd
man/CategoryTable.Rd
man/ConvertGeneNames.Rd
man/CreateAzimuthData.Rd
man/CreateColorMap.Rd
man/FilterFeatures.Rd
man/FormatDiffTime.Rd
man/GetCSS.Rd
man/GetColorMap.Rd
man/GetPlotRef.Rd
man/GetTranscripts.Rd
man/LoadBridgeReference.Rd
man/LoadFileInput.Rd
man/LoadH5AD.Rd
man/LoadH5ADobs.Rd
man/LoadReference.Rd
man/NNTransform.Rd
man/PlottableMetadataNames.Rd
man/ReferenceVersion.Rd
man/RenderDiffExp.Rd
man/RenderDiffMotifExp.Rd
man/RunAzimuth.Rd
man/RunAzimuthATAC.Rd
man/SaveAzimuthReference.Rd
man/SetColorMap.Rd
man/ValidateAzimuthReference.Rd
src/Makevars
src/RcppExports.cpp
src/csc_to_csr.cpp
vignettes/run_azimuth_tutorial.Rmd
vignettes/run_azimuth_tutorial.html
