calcCV: calcCV
In sccallahan/WARPqpcr: Web App and R Package for qPCR
Description
Usage
Arguments
Details
Value
Description
Calculates the coefficient of variation for each gene for each sample and triggers a message if any samples
are above the desired threshold.
Usage
1
calcCV(avgCtObj, cutoff = 1)
Arguments
avgCtObj
A data.frame generated from the getAvgCT function.
cutoff
The cutoff value for the coefficient of variation for triggering a warning message. Default 1.0, or 1%.
Details
Technical replicate error is not carried forward when calculating error for biological replicates. The coefficient of variation
is intended to be used a filter for checking the quality of technical replication before proceeding.
Value
A data.frame.
sccallahan/WARPqpcr documentation built on March 1, 2020, 1:23 a.m.
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Description Usage Arguments Details Value
Description
Calculates the coefficient of variation for each gene for each sample and triggers a message if any samples are above the desired threshold.
Usage
1 | calcCV(avgCtObj, cutoff = 1)
|
Arguments
avgCtObj |
A data.frame generated from the |
cutoff |
The cutoff value for the coefficient of variation for triggering a warning message. Default 1.0, or 1%. |
Details
Technical replicate error is not carried forward when calculating error for biological replicates. The coefficient of variation is intended to be used a filter for checking the quality of technical replication before proceeding.
Value
A data.frame.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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