plot_ddCT_singleRep: plot_ddCT_singlerep

In sccallahan/WARPqpcr: Web App and R Package for qPCR

Description

Generates a barplot of the ddCT values for each sample with error bars.

Usage

plot_ddCT_singleRep(ddCTobj, palette = "Set1", xlab = "", ylab = "",
  title = "", legend.title = "", hideHKG = FALSE, HKGname,
  theme_classic = TRUE, rel.exp = FALSE)

Arguments

ddCTobj	A data.frame generated from the get_ddCT_singleRep function.
palette	Any color palette from RColorBrewer.
xlab	x axis label.
ylab	y axis label.
title	Main title for the plot.
legend.title	Title for the plot legend.
hideHKG	Boolean value indicating whether or not the housekeeping gene should be removed from the plot
HKGname	A character vector of the housekeeping gene name. Required if 'hideHKG' is TRUE.
theme_classic	Boolean value. TRUE will yield a plot with the 'classic' background. FALSE will yield a plot with the default ggplot2 theme.
rel.exp	Boolean value indicating whether or not relative expression values should be used for plot. TRUE will generate a plot of relative expression values, FALSE will generate a plot of log2 fold-change values.

Value

A ggplot2 barplot of ddCT values.

sccallahan/WARPqpcr documentation built on March 1, 2020, 1:23 a.m.