get_chip_dCT: get_chip_dCT
In sccallahan/WARPqpcr: Web App and R Package for qPCR

Description Usage Arguments Details Value

Calculates dCT values for chip qpcr data and organizes it into a format compatible with signifTest.

1 2	get_chip_dCT(sampleObj, inputName = NULL, mockName = NULL, inputPercent = NULL, method)

`sampleObj`	A qPCRBatch object generated from the `readSampleSheet` function.
`inputName`	A character vector of the common name given to all input samples
`mockName`	A character vector of the common name given to all mock (e.g. IgG control) samples
`inputPercent`	The percent of starting chromatin used as input. Should be an integer in percent (e.g. 2% input is 2).
`method`	Indicates which calculation should be performed. Must be one of ("i", "input") for input, or ("fe", "fold enrichment") for fold enrichment.

This function only works with biological replicate data. Providing a 'mockName' for percent input calculations will remove the mock samples from the calculations. Likewise, providing an 'inputName' for fold enrichment calculations will remove the input samples from the calculations.

A data.frame

sccallahan/WARPqpcr documentation built on March 1, 2020, 1:23 a.m.