adjustExprLevel-MeRIP.Peak-method | adjustExprLevel |
annotatePeak-MeRIP.Peak-method | annotatePeak |
BetaBinTest | BetaBinTest |
callPeakBinomial | callPeakBinomial |
callPeakFisher | callPeakFisher |
consistentPeak-MeRIP.Peak-method | consistentPeak |
countReads | countReads |
counts | counts |
dot-Bino_test | Binomial test |
geneBins-MeRIP-method | geneBins |
geneExpression | extractor for RNAseq data |
geneExpression-MeRIP.Peak-method | geneExpression |
geneExpressionTMP | getTPM from geneSum |
get_peak_logOR | get_peak_logOR |
gtfToGeneModel | gtfToGeneModel |
GuitarPlotNew | GuitarPlotNew |
Input.files | Input.files |
IP.files | IP.files |
jointPeakCount | jointPeakCount |
MetaGene | MetaGene |
normalizeLibrary-MeRIP.Peak-method | normalizeLibrary |
peakDistribution | plot distribution of peaks on gene annotation |
plotGene | old coverage plot function. |
plotGeneCoverage | plotGeneCoverage |
plotGeneCov-MeRIP.Peak-method | plotGeneCov |
plotGeneMonster | plotGeneMonster |
plotGenePair | plotGenePair |
plotMetaGene | plotMetaGene |
plotMetaGeneMulti | plotMEtaGeneMulti A wrapper function for Guitar to plot meta... |
plotPCAfromMatrix | plotPCAfromMatrix |
plotTPM | plotTPM |
PrepCoveragePlot-MeRIP.Peak-method | Prepare coverage plot |
QNBtest | Wraper function to use QNB package to test for differential... |
qqplot.pvalue | qqplot.pvalue |
QTL_BetaBin | QTL_BetaBin |
QTL_BetaBin2 | QTL_BetaBin2 |
QTL_BetaBin_permute | QTL_BetaBin_permute |
QTL_PoissonGamma | QTL_PoissonGamma |
RADARtest | RADARtest |
reportJointPeak | reportJointPeak |
results | export results |
select | subset MeRIPdata |
swapChr22.QTL_BetaBin | QTL_BetaBin |
swapChr22.QTL_BetaBin.permute | swapChr22.QTL_BetaBin.permute |
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