Man pages for scottzijiezhang/MeRIPtools
Analyze MeRIP-seq data and QTL calling

adjustExprLevel-MeRIP.Peak-methodadjustExprLevel
annotatePeak-MeRIP.Peak-methodannotatePeak
BetaBinTestBetaBinTest
callPeakBinomialcallPeakBinomial
callPeakFishercallPeakFisher
consistentPeak-MeRIP.Peak-methodconsistentPeak
countReadscountReads
countscounts
dot-Bino_testBinomial test
geneBins-MeRIP-methodgeneBins
geneExpressionextractor for RNAseq data
geneExpression-MeRIP.Peak-methodgeneExpression
geneExpressionTMPgetTPM from geneSum
gtfToGeneModelgtfToGeneModel
GuitarPlotNewGuitarPlotNew
Input.filesInput.files
IP.filesIP.files
jointPeakCountjointPeakCount
MetaGeneMetaGene
normalizeLibrary-MeRIP.Peak-methodnormalizeLibrary
peakDistributionplot distribution of peaks on gene annotation
plotGeneold coverage plot function.
plotGeneCoverageplotGeneCoverage
plotGeneCov-MeRIP.Peak-methodplotGeneCov
plotGeneMonsterplotGeneMonster
plotGenePairplotGenePair
plotMetaGeneplotMetaGene
plotMetaGeneMultiplotMEtaGeneMulti A wrapper function for Guitar to plot meta...
plotPCAfromMatrixplotPCAfromMatrix
plotTPMplotTPM
PrepCoveragePlot-MeRIP.Peak-methodPrepare coverage plot
QNBtestWraper function to use QNB package to test for differential...
qqplot.pvalueqqplot.pvalue
QTL_BetaBinQTL_BetaBin
QTL_BetaBin2QTL_BetaBin2
QTL_BetaBin_permuteQTL_BetaBin_permute
QTL_PoissonGammaQTL_PoissonGamma
RADARtestRADARtest
reportJointPeakreportJointPeak
resultsexport results
selectsubset MeRIPdata
swapChr22.QTL_BetaBinQTL_BetaBin
swapChr22.QTL_BetaBin.permuteswapChr22.QTL_BetaBin.permute
scottzijiezhang/MeRIPtools documentation built on Nov. 5, 2019, 8:46 a.m.