Files in scottzijiezhang/MeRIPtools
Analyze MeRIP-seq data and QTL calling
.Rbuildignore
.gitignore
DESCRIPTION
MeRIPtools.Rproj
NAMESPACE
R/AllGenerics.R
R/Guitar_functions.R
R/MeRIP_class.R
R/PlotGene.R
R/QTL_PoissonGamma.R
R/QTL_betaBinomial.R
R/QTL_betaBinomial.neg.R
R/RcppExports.R
R/countReads.R
R/countReadsCarRNA.R
R/countReadsFromBam.R
R/get_peak_logOR.R
R/gtfToGeneModel.R
R/initialization.R
R/methods.R
R/plotGeneCov.R
R/plotMetaGene.R
R/plotPCA.DESeq2.R
R/qqplot.pvalue.R
R/randomPeak.R
README.md
man/BetaBinTest.Rd
man/GuitarPlotNew.Rd
man/IP.files.Rd
man/Input.files.Rd
man/MetaGene.Rd
man/PrepCoveragePlot-MeRIP.Peak-method.Rd
man/QNBtest.Rd
man/QTL_BetaBin.Rd
man/QTL_BetaBin2.Rd
man/QTL_BetaBin_permute.Rd
man/QTL_PoissonGamma.Rd
man/RADARtest.Rd
man/adjustExprLevel-MeRIP.Peak-method.Rd
man/annotatePeak-MeRIP.Peak-method.Rd
man/callPeakBinomial.Rd
man/callPeakFisher.Rd
man/consistentPeak-MeRIP.Peak-method.Rd
man/countReads.Rd
man/counts.Rd
man/dot-Bino_test.Rd
man/geneBins-MeRIP-method.Rd
man/geneExpression-MeRIP.Peak-method.Rd
man/geneExpression.Rd
man/geneExpressionTMP.Rd
man/get_peak_logOR.Rd
man/gtfToGeneModel.Rd
man/jointPeakCount.Rd
man/normalizeLibrary-MeRIP.Peak-method.Rd
man/peakDistribution.Rd
man/plotGene.Rd
man/plotGeneCov-MeRIP.Peak-method.Rd
man/plotGeneCoverage.Rd
man/plotGeneMonster.Rd
man/plotGenePair.Rd
man/plotMetaGene.Rd
man/plotMetaGeneMulti.Rd
man/plotPCAfromMatrix.Rd
man/plotTPM.Rd
man/qqplot.pvalue.Rd
man/reportJointPeak.Rd
man/results.Rd
man/select.Rd
man/swapChr22.QTL_BetaBin.Rd
man/swapChr22.QTL_BetaBin.permute.Rd
src/.PoissonGamma.cpp.swp
src/.gitignore
src/Makevars
src/PoissonGamma.cpp
src/RcppExports.cpp
