QTL_PoissonGamma: QTL_PoissonGamma
In scottzijiezhang/MeRIPtools: Analyze MeRIP-seq data and QTL calling

QTL_PoissonGamma

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QTL_PoissonGamma(pheno, vcf_file, peak_bed, testWindow = 1e+05,
  Chromosome, Range = NULL, Covariates = NULL, maxPsi = 100,
  thread = 1)

`pheno`	The phenotype data matrix. Needs to be IP read count that has been normalized for expression level.
`vcf_file`	The vcf file for genotype. The chromosome position must be sorted!!
`peak_bed`	The peak file in BED12 format that needs to correspond to phenotype data matrix.
`testWindow`	Integer. Test SNPs in <testWindow> bp window flanking the peak.
`Chromosome`	The chromsome to run QTL test.
`Range`	The position range on a chromosome to test.
`Covariates`	The matrix for covariates to be included in the test.
`maxPsi`	The max estimation for the random effect parameter Psi.