swapChr22.QTL_BetaBin: QTL_BetaBin
In scottzijiezhang/MeRIPtools: Analyze MeRIP-seq data and QTL calling

QTL_BetaBin

swapChr22.QTL_BetaBin(MeRIPdata, vcf_file,
  BSgenome = BSgenome.Hsapiens.UCSC.hg19, testWindow = 1e+05,
  Chromosome, Range = NULL, Covariates = NULL, AdjustGC = TRUE,
  AdjIPeffi = TRUE, PCsToInclude = 0, thread = 1)

`MeRIPdata`	The MeRIP.Peak object
`vcf_file`	The vcf file for genotype. The chromosome position must be sorted!!
`BSgenome`	The BSgenome object. This needs to match the genome version of the gtf files.
`testWindow`	Integer. Test SNPs in <testWindow> bp window flanking the peak.
`Chromosome`	The chromsome to run QTL test.
`Range`	The position range on a chromosome to test.
`Covariates`	The matrix for covariates to be included in the test.