callPeakFisher: callPeakFisher
In scottzijiezhang/MeRIPtools: Analyze MeRIP-seq data and QTL calling
Description
callPeakFisher
Usage
1
2
callPeakFisher(MeRIP, min_counts = 15, peak_cutoff_fdr = 0.05,
peak_cutoff_oddRatio = 1, threads = 1)
Arguments
MeRIP
The MeRIP object from countReads function.
min_counts
The minimal number of reads present in a bin to be called a peak.
peak_cutoff_fdr
The cutoff of fdr of fisher's exact test to call peak.
peak_cutoff_oddRatio
The minimal oddRatio of fisher's exact test to call peak.
threads
The number of threads to use. Default uses 1 threads.
scottzijiezhang/MeRIPtools documentation built on March 27, 2021, 3:04 a.m.
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Description
callPeakFisher
Usage
1 2 | callPeakFisher(MeRIP, min_counts = 15, peak_cutoff_fdr = 0.05,
peak_cutoff_oddRatio = 1, threads = 1)
|
Arguments
MeRIP |
The MeRIP object from countReads function. |
min_counts |
The minimal number of reads present in a bin to be called a peak. |
peak_cutoff_fdr |
The cutoff of fdr of fisher's exact test to call peak. |
peak_cutoff_oddRatio |
The minimal oddRatio of fisher's exact test to call peak. |
threads |
The number of threads to use. Default uses 1 threads. |
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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