API for shackett/simmer
Systematic Identification of Meaningful Metabolic Enzyme Regulation

Global functions
FVA_read Source code
FVA_setup Source code
build_kinetic_parameter_priors Man page Source code
build_stoiMat Man page Source code
calculate_QP_fluxes Man page Source code
finalize_reaction_equations Man page Source code
fit_reaction_equation_MCMC_NNLS Man page Source code
fit_reaction_equations Man page Source code
format_boundary_conditions Man page Source code
format_omic_data Man page Source code
format_raw_equations Man page Source code
lik_calc_fittedSD Man page Source code
load_metabolic_model Man page Source code
metIDtoSpec Source code
par_draw Man page Source code
parse_custom Man page Source code
populate_reactionEqns Man page Source code
read_simmer_tsv Source code
read_write_python_FVA Source code
rxnIDtoEnz Source code
rxn_search Source code
setup_FBA_constraints Man page Source code
setup_equality_constraints Source code
setup_inequality_constraints Source code
summarize_kinetic_parameters Man page Source code
shackett/simmer documentation built on May 26, 2017, 6:59 a.m.