build_stoiMat: Build stoichiometric matrix
In shackett/simmer: Systematic Identification of Meaningful Metabolic Enzyme Regulation
Description
Usage
Arguments
Value
Description
Create the stoichiometry matrix, indicating the change of metabolites (rows)
per chemical reaction (columns)
Usage
1
2
build_stoiMat(metabolites, reactions, corrFile, rxnFile,
internal_names = FALSE)
Arguments
metabolites
metabolite IDs (e.g. s_0001)
reactions
reaction IDs (e.g. r_0001)
corrFile
mappings between metabolite IDs, names ...
rxnFile
stoichometry of individual reactions
internal_names
should row/column names be model IDs (internal_names = T) or common names (internal_names = F)
Value
a matrix with metabolites as rows, reactions as columns and reaction stoichiometry as values
shackett/simmer documentation built on May 29, 2019, 8:06 p.m.
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Description Usage Arguments Value
Description
Create the stoichiometry matrix, indicating the change of metabolites (rows) per chemical reaction (columns)
Usage
1 2 | build_stoiMat(metabolites, reactions, corrFile, rxnFile,
internal_names = FALSE)
|
Arguments
metabolites |
metabolite IDs (e.g. s_0001) |
reactions |
reaction IDs (e.g. r_0001) |
corrFile |
mappings between metabolite IDs, names ... |
rxnFile |
stoichometry of individual reactions |
internal_names |
should row/column names be model IDs (internal_names = T) or common names (internal_names = F) |
Value
a matrix with metabolites as rows, reactions as columns and reaction stoichiometry as values
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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