format_omic_data: Format omic data

In shackett/simmer: Systematic Identification of Meaningful Metabolic Enzyme Regulation

Description

Align multi omic data across experimental conditions; Combine metabolites and enzymes

Usage

format_omic_data(kineticPars, all_species, rxnSummary,
  kinetically_differing_isoenzymes)

Arguments

kineticPars	table summarizing which species all non-linear kinetic parameters correspond to
all_species	all_species table summarizing the types of all reaction species
rxnSummary	a list containing a reaction equation to fit (several forms of it) and multi-omic data
kinetically_differing_isoenzymes	True-False: does only one equation exist for the reaction (false) or are are reaction equations isoenzyme specific (true)

Value

a list summarizing the abundances and uncertainties in reaction metabolites, enzymes and flux

shackett/simmer documentation built on May 29, 2019, 8:06 p.m.