finalize_reaction_equations: Finalize reaction equations

Description Usage Arguments Details Value

View source: R/MCMC_NNLS_functions.R

Description

Expression combining the log-occupancy equation and scaling of enzyme abundance by activity determined w.r.t. metabolites/enzymes in log-space and linear-space

Usage

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finalize_reaction_equations(rxnEquations, all_species,
  kinetically_differing_isoenzymes)

Arguments

rxnEquations

expressions for reaction equations

all_species

all_species table summarizing the types of all reaction species

kinetically_differing_isoenzymes

True-False: does only one equation exist for the reaction (false) or are are reaction equations isoenzyme specific (true)

Details

If there are multiple isoenzymes which differ kinetically then their expressions are generated seperately and then concatenated a single equation is returned

Value

expand rxnEquations to include kcat parameters and partial derivatives of rxnEquations w.r.t. each specie


shackett/simmer documentation built on May 26, 2017, 6:59 a.m.