Systematic Identification of Meaningful Metabolic Enzyme Regulation

build_kinetic_parameter_priors | Build kinetic parameter priors |

build_stoiMat | Build stoichiometric matrix |

calculate_QP_fluxes | Calculate QP fluxes |

finalize_reaction_equations | Finalize reaction equations |

fit_reaction_equation_MCMC_NNLS | Fit reaction equation using MCMC and NNLS |

fit_reaction_equations | Fit reaction equations |

format_boundary_conditions | Format boundary conditions |

format_omic_data | Format omic data |

format_raw_equations | Format raw equations |

lik_calc_fittedSD | Find the likelihood of data given proposed parameters |

load_metabolic_model | Load metabolic model |

par_draw | Draw parameters |

parse_custom | Parse custom metabolic model extensions |

populate_reactionEqns | Populate reaction equations |

setup_FBA_constraints | Setup FBA constraints |

summarize_kinetic_parameters | Summarize kinetic parameters |

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