Man pages for shackett/simmer
Systematic Identification of Meaningful Metabolic Enzyme Regulation

build_kinetic_parameter_priorsBuild kinetic parameter priors
build_stoiMatBuild stoichiometric matrix
calculate_QP_fluxesCalculate QP fluxes
finalize_reaction_equationsFinalize reaction equations
fit_reaction_equation_MCMC_NNLSFit reaction equation using MCMC and NNLS
fit_reaction_equationsFit reaction equations
format_boundary_conditionsFormat boundary conditions
format_omic_dataFormat omic data
format_raw_equationsFormat raw equations
lik_calc_fittedSDFind the likelihood of data given proposed parameters
load_metabolic_modelLoad metabolic model
par_drawDraw parameters
parse_customParse custom metabolic model extensions
populate_reactionEqnsPopulate reaction equations
setup_FBA_constraintsSetup FBA constraints
summarize_kinetic_parametersSummarize kinetic parameters
shackett/simmer documentation built on May 26, 2017, 6:59 a.m.