setup_FBA_constraints: Setup FBA constraints
In shackett/simmer: Systematic Identification of Meaningful Metabolic Enzyme Regulation
Description
Usage
Arguments
Details
Value
Description
either determine reactions that cannot carry flux given stoichiometry, boundary fluxes and directionality or write all
equality and inequality constraints to the global environment.
Usage
1
setup_FBA_constraints(return_infeasible = F, infRxMet = NULL)
Arguments
return_infeasible
logical: if TRUE then only return metabolite and reaction IDs to be removed.
If FALSE then determine all equality and inequality constraints.
infRxMet
a list of metabolites and reactions to remove
Details
If return_infeasible is TRUE then a data.frame of reactions that cannot carry flux (and associated metabolites)
will be returned providing this data.frame as infRxMet will exclude these reactions and species from subsequent steps.
Value
write optimization constraints to global environment
shackett/simmer documentation built on May 29, 2019, 8:06 p.m.
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Description Usage Arguments Details Value
Description
either determine reactions that cannot carry flux given stoichiometry, boundary fluxes and directionality or write all equality and inequality constraints to the global environment.
Usage
1 | setup_FBA_constraints(return_infeasible = F, infRxMet = NULL)
|
Arguments
return_infeasible |
logical: if TRUE then only return metabolite and reaction IDs to be removed. If FALSE then determine all equality and inequality constraints. |
infRxMet |
a list of metabolites and reactions to remove |
Details
If return_infeasible is TRUE then a data.frame of reactions that cannot carry flux (and associated metabolites) will be returned providing this data.frame as infRxMet will exclude these reactions and species from subsequent steps.
Value
write optimization constraints to global environment
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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