Man pages for shackett/simmer
Systematic Identification of Meaningful Metabolic Enzyme Regulation
| build_kinetic_parameter_priors | Build kinetic parameter priors |
| build_stoiMat | Build stoichiometric matrix |
| calculate_QP_fluxes | Calculate QP fluxes |
| finalize_reaction_equations | Finalize reaction equations |
| fit_reaction_equation_MCMC_NNLS | Fit reaction equation using MCMC and NNLS |
| fit_reaction_equations | Fit reaction equations |
| format_boundary_conditions | Format boundary conditions |
| format_omic_data | Format omic data |
| format_raw_equations | Format raw equations |
| lik_calc_fittedSD | Find the likelihood of data given proposed parameters |
| load_metabolic_model | Load metabolic model |
| par_draw | Draw parameters |
| parse_custom | Parse custom metabolic model extensions |
| populate_reactionEqns | Populate reaction equations |
| setup_FBA_constraints | Setup FBA constraints |
| summarize_kinetic_parameters | Summarize kinetic parameters |
