BI_ensemblGo: Annotate the ENSG id with GO terms via ensembl online

In shijianasdf/BasicBioinformaticsAnalysisFromZhongShan: Launch Usual Clinical tool for Kind Yield

Description

ensemblGo annotate the ENSEMBL ID with GO terms via ensembl online

Usage

  ensemblGo(genes,
            parallel = F,
            save.file = F,
            names = "love")

Arguments

genes	a character vector of ENSG id
parallel	whether use parallel strategy to accelerate the process
save.file	whether save the data
names	part of saved file name

Author(s)

Weibin Huang<[e-mail]>

Examples

## test genes
test <- common.annot$ENSEMBL;genes <- test[1:50]

## Not use parallel
system.time(
  a <- ensemblGo(genes)
)
# User  System  time (50 tests)
# 0.56  0.15    36.20


## Use parallel
system.time(
  a <- ensemblGo(genes,parallel = T)
)
# User  System  time (50 tests)
# 0.09  0.01    14.19

## Get available Go annotation
a2 <- a[a$Accession != "NotAvailable",]

shijianasdf/BasicBioinformaticsAnalysisFromZhongShan documentation built on Jan. 3, 2020, 10:08 p.m.