BI_cox.optimized: help get a best model based on prognosis information via Cox...

In shijianasdf/BasicBioinformaticsAnalysisFromZhongShan: Launch Usual Clinical tool for Kind Yield

Description

help get a best model based on prognosis information via Cox model

Usage

cox.optimized(
  expr.matrix,
  design,
  select,
  event.status=c("TTR.status","DFS.status","OS.status"),
  event.time=c("TTR.time","DFS.time","OS.time"),
  event.lower =c(89,89,89),
  direction="both",
  method = "pca",
  digits = 5
)

Arguments

expr.matrix	expression matrix
design	design object
select	selected markers or genes
event.status	colnames of event status
event.time	colnames of event time
event.lower	the lower limit of event time
direction	parameter of MASS::stepAIC.One of "both", "backward", "forward".Default is "both"
method	whether use PCA strategy to avoid multicollinearity.Default is "pca"
digits	the digits of Cor

Author(s)

Weibin Huang<[e-mail]>

shijianasdf/BasicBioinformaticsAnalysisFromZhongShan documentation built on Jan. 3, 2020, 10:08 p.m.