Files in shijianasdf/BasicBioinformaticsAnalysisFromZhongShan

Launch Usual Clinical tool for Kind Yield

DESCRIPTION

NAMESPACE

R/Anno_AmiGO.R R/Anno_AnnoEset.R R/Anno_AnnotateJournal.R R/Anno_AnnotateStringPPI.R R/Anno_ProteinAnnotation.R R/Anno_SeqmanAfter.R R/Anno_SeqmanBefore.R R/Anno_SeqmanBefore2.R R/Anno_convert.R R/Anno_fa.annotate.R R/Anno_get.ISSN.R R/Anno_get.ISSN2.R R/Anno_get.esmbl.annotation.R R/Anno_get.fa.annoatation.R R/Anno_getAnnotation.R R/Anno_getAnnotation2.R R/Anno_searchIF.R R/BI_BalanceSplit.R R/BI_CreateBioProject.R R/BI_DESeq1.R R/BI_FPKMtoTPM.R R/BI_FastCeRNA.R R/BI_FastCeRNA_edge.R R/BI_FastCeRNA_edge2.R R/BI_FastChord.R R/BI_FastCoxlasso.R R/BI_FastEnrichPlot.R R/BI_FastGO.R R/BI_FastGSEA.R R/BI_FastImmuScore.R R/BI_FastKEGG.R R/BI_FastMS.R R/BI_FastRandomForest.R R/BI_FastWGCNA.R R/BI_FastWGCNA_network.R R/BI_GetMEs.R R/BI_GetWGCNATrait.R R/BI_ModuleHub.R R/BI_ModulePreservation.R R/BI_ModuleSurv.R R/BI_ModuleSurvValid.R R/BI_ModuleTrait.R R/BI_ModuleTraitValid.R R/BI_ROC.lasso.R R/BI_ROC.optimize.R R/BI_ScreenGenes.R R/BI_SequenceMotif.R R/BI_Survplot.genedata.R R/BI_bootstrap.lasso.R R/BI_boxplot.genedata2.R R/BI_boxplot_genedata.R R/BI_ceRNAData.R R/BI_ceRNANet.R R/BI_clinic.filters.R R/BI_co.matrix2.R R/BI_co.matrix3.R R/BI_cox.optimized.R R/BI_cox.optimized2.R R/BI_cox.optimized3.R R/BI_cox.optimized4.R R/BI_cox.threshold3.R R/BI_edgeR1.R R/BI_ensemblGo.R R/BI_ensemblSummary.R R/BI_exampleLassoCox.R R/BI_extra.surv.R R/BI_getexpr.R R/BI_heatmap.dds.R R/BI_heatmap.dds2.R R/BI_limma1.R R/BI_pair.PSM.R R/BI_pair.random.R R/BI_result.DEG.R R/BI_result.ROCList.R R/BI_result.lassoModel.R R/BI_rowScale.R R/BI_sametrend.R R/BI_starBase1.R R/BI_testBatchEffect.R R/BalanceSplit2.R R/GEO_AddDesignList.R R/GEO_AnnotateDesignEset.R R/GEO_AnnotateDesignEset2.R R/GEO_MApipeline.R R/GEO_MApipeline2.R R/GEO_QC.PCA.R R/GEO_QC.boxplot.R R/GEO_QC.cluster.R R/GEO_QC.density.R R/GEO_QC.plotMA.R R/GEO_QCplot.R R/GEO_boxplot.DE.R R/GEO_boxplot.MA.R R/GEO_getElist.R R/GEO_getOneDesignEset.R R/Supplement_MINE.R R/Supplement_MrY.R R/Supplement_develop.R R/Supplement_networkD3.R R/Supplement_testFastBar.R R/base_CorrectTNM.R R/base_FastMINE.R R/base_FastMINE2.R R/base_FastPearson.R R/base_FastSurvplot.R R/base_FastUpset.R R/base_Fastbar.R R/base_Fastboxplot.R R/base_Fastcornet.R R/base_Fastcornet2.R R/base_Fastcorrplot.R R/base_Fastcorrplot2.1.R R/base_Fastcorrplot2.R R/base_Fastextra.R R/base_Fastgrep.R R/base_Fastmatch.R R/base_Fastpoint1.R R/base_LuckyVerbose.R R/base_MINEplot.R R/base_Make.cormatrix.R R/base_Plus.library.R R/base_Plus.order.R R/base_QuickStart.R R/base_classify.R R/base_compareROC.R R/base_compareROC2.R R/base_convertStatus.R R/base_cut.vector.R R/base_environment.R R/base_filter.low.R R/base_is.all.na.R R/base_is.all.true.R R/base_is.one.na.R R/base_is.one.true.R R/base_load1.R R/base_rond.plus.R R/base_set.default.R R/base_show.color.R R/base_stringposition.R R/base_subset2.R R/clinic_CreateTableOne2.R R/clinic_getCoxTable.R R/clinic_getNomogram.R R/clinic_getTimeROC.R R/experiment_FastQPCR.R R/experiment_WesternBlotquantity.R R/experiment_testPrimer.R

data/IF_3.Inf.rda

data/ceRNA_lnc.rda

data/ceRNA_lncTargets_2018-11-27.rda

data/ceRNA_pc.rda

data/ceRNA_pcTargets_2018-12-04.rda

data/common.annot.miR_2019-03-04.rda

data/common.annot.transcripts_GRCh38.rda

data/common.annot.width_2018-11-26.rda

data/common.annot.width_GRCh37.19_2018-11-29.rda

data/common.annot_2018-09-18.rda

data/common.annot_GRCh37.19_2018-11-29.rda

data/data.TableOne.rda

data/data.selfprocess2.2.rda

data/data.selfprocess2.3.rda

data/data.selfprocess2.rda

data/design.i1.rda

data/expr.rda

data/fat.rda

data/fpkm1.rda

data/genenames.stad.rda

data/geo.annot_2018-09-18.rda

data/gtf.annot_2018-09-18.rda

data/journals.rda

data/lncRNA.type.rda

data/mir.family.hsa_20160916.rda

data/music.rda

data/mycolor.rda

data/protein.annot_2018-11-17.rda

data/qpcr.rda

data/rna.counts.rda

data/rna.design.rda

data/rna.design.tumor.rda

data/rna.fpkm.rda

data/rna.fpkm.tumor.rda

data/rna.tpm.rda

data/sig.exprs.rda

data/x77.network.rda

inst/extdata/GPLData.xlsx

inst/extdata/MINE.jar

inst/extdata/STAD_AJCC stage.xlsx

inst/extdata/wb quantity.xlsx

inst/extdata/wind 00_00_04-00_00_28.m4a

man/AnnoEset.Rd man/AnnotateJournal.Rd man/AnnotateStringPPI.Rd man/BI_BalanceSplit.Rd man/BI_FPKMtoTPM.Rd man/BI_FastCoxlasso.Rd man/BI_ROC.lasso.Rd man/BI_ROC.optimized.Rd man/BI_bootstrap.lasso.Rd man/BI_boxplot.genedata2.Rd man/BI_clinic.filters.Rd man/BI_co.matrix2.Rd man/BI_cox.optimized.Rd man/BI_cox.optimized3.Rd man/BI_cox.optimized4.Rd man/BI_cox.threshold3.Rd man/BI_edgeR1.Rd man/BI_ensemblGo.Rd man/BI_ensemblGoEnrich.Rd man/BI_extra.surv.Rd man/BI_genename.stad.Rd man/BI_getexpr.Rd man/BI_heatmap.dds.Rd man/BI_heatmap.dds2.Rd man/BI_pair.PSM.Rd man/BI_pair.random.Rd man/BI_result.DEG.Rd man/BI_result.ROCList.Rd man/BI_result.lassoModel.Rd man/BI_rowScale.Rd man/BI_sametrend.Rd man/BI_select.eset.Rd man/BeforeWGCNA.Rd man/CorrectTNM.Rd man/CreateBioProject.Rd man/DESeq1.Rd man/FastBar.Rd man/FastCeRNA.Rd man/FastCeRNA_edge.Rd man/FastCeRNA_edge2.Rd man/FastEnrichPlot.Rd man/FastGO.Rd man/FastGSEA.Rd man/FastKEGG.Rd man/FastMS.Rd man/FastQPCR.Rd man/FastScore.Rd man/FastSurvplot.Rd man/FastWGCNA.Rd man/FastWGCNA_network.Rd man/Fastboxplot.Rd man/Fastcornet2.Rd man/GEO_AddDesignList.Rd man/GEO_AnnotateDesignEset.Rd man/GEO_MApipeline.Rd man/GEO_QC.PCA.Rd man/GEO_QC.boxplot.Rd man/GEO_QC.cluster.Rd man/GEO_QC.density.Rd man/GEO_QC.plotMA.Rd man/GEO_QCplot.Rd man/GEO_boxplot.DE.Rd man/GEO_boxplot.MA.Rd man/GEO_getElist.Rd man/GEO_getOneDesignEset.Rd man/GetMEs.Rd man/GetWGCNATrait.Rd man/LuckyVerbose.Rd man/MakeENlist.Rd man/ModuleHub.Rd man/ModulePreservation.Rd man/ModuleSurv.Rd man/ModuleSurvValid.Rd man/ModuleTrait.Rd man/ModuleTraitValid.Rd man/Plus.library.Rd man/ProteinAnnotation.Rd man/ScreenGenes.Rd man/SearchIF2.Rd man/SeqmanAfter.Rd man/SeqmanBefore.Rd man/SequenceMotif.Rd man/Survplot_genedata.Rd man/WesternBlotQuantity.Rd man/base_FastMINE.Rd man/base_FastPearson.Rd man/base_FastUpset.Rd man/base_Fastcornet.Rd man/base_Fastcornet2.Rd man/base_Fastcorrplot.Rd man/base_Fastcorrplot2.1.Rd man/base_Fastextra.Rd man/base_Fastgrep.Rd man/base_Fastpoint1.Rd man/base_MINEplot.Rd man/base_Make.cormatrix.Rd man/base_Plus.library.Rd man/base_Plus.order.Rd man/base_QuickStart.Rd man/base_common.annot.Rd man/base_filter.low.Rd man/base_is.all.na.Rd man/base_is.one.na.Rd man/base_load1.Rd man/base_saveFastcornet.Rd man/base_set.default.Rd man/base_show.color.Rd man/base_stringposition.Rd man/base_subset2.Rd man/boxplot_genedata.Rd man/ceRNAData.Rd man/ceRNANet.Rd

man/ceRNA_lncTargets.rda

man/classify.Rd man/clinic_CreateTableOne2.Rd man/clinic_getCoxTable.Rd man/combn2.Rd man/compareROC.Rd man/compareROC2.Rd man/convert.Rd man/convertStatus.Rd man/cox.optimized2.Rd man/cut_vector.Rd man/data_fpkm.Rd man/data_journals.Rd man/exampleLassoCox.Rd man/fa.annotate.Rd man/geom_cake.Rd man/geom_flat_violin.Rd man/geom_ord_ellipse.Rd man/get.ISSN.Rd man/get.ISSN2.Rd man/get.fa.annoatation.Rd man/getAnnotation.Rd man/getAnnotation2.Rd man/getNomogram.Rd man/getTimeROC.Rd man/getsearch.Rd man/mymusic.Rd man/round2.Rd man/starBase1.Rd man/testBatchEffect.Rd man/testFastBar.Rd man/testPrimer.Rd man/testPrimer1.Rd vignettes/FastBar.Rmd vignettes/FastWGCNA.Rmd vignettes/Theory of biomedical project.Rmd vignettes/example.Rmd

shijianasdf/BasicBioinformaticsAnalysisFromZhongShan documentation built on Jan. 3, 2020, 10:08 p.m.