testPrimer1: Give a primer,test the amplication sequence and whether cross...

In shijianasdf/BasicBioinformaticsAnalysisFromZhongShan: Launch Usual Clinical tool for Kind Yield

Description

Give a primer,test the amplication sequence and whether cross different exons

Usage

testPrimer1(forward, reverse, path.transcript.fa, path.exon.fa,
  verbose = T)

Arguments

forward	forward primer
reverse	reverse primer
path.transcript.fa	the path of transcript(cDNA) fa file
path.exon.fa	the path of exons fa file

Value

A luckyList

Author(s)

Weibin Huang<[e-mail]>

See Also

XStringSet-io;XVector-class;matchPattern;

Examples

## This is a simulative process and available only with CORRECT VARIABLES
forward = "AAGGAGCCTGGACCCAACTT"
reverse = "TGAGCCAGCCTTCATTTTCCA"
path.transcipt.fa = "E:/iProjects/XYJ.lnc/constant/Homo_sapiens_DSCR8_cDNA.fa"
path.exon.fa = "E:/iProjects/XYJ.lnc/constant/Homo_sapiens_DSCR8_Exons.fa"

res <- testPrimer1(forward,
                   reverse,
                   path.transcript.fa,
                   path.exon.fa)
## see result
names(res$Data$Amplication)
res$Data$CrossExons

shijianasdf/BasicBioinformaticsAnalysisFromZhongShan documentation built on Jan. 3, 2020, 10:08 p.m.