AnnotateStringPPI: Re-annotation for ppi network from STRING web
In shijianasdf/BasicBioinformaticsAnalysisFromZhongShan: Launch Usual Clinical tool for Kind Yield
Description
Usage
Arguments
Author(s)
Examples
View source: R/Anno_AnnotateStringPPI.R
Description
Re-annotation for ppi network from STRING web
Usage
1
AnnotateStringPPI(ppi, anno.abnormal)
Arguments
ppi
a data frame from "... as simple tabular text output" in string PPI network analysis
anno.abnormal
a list with wrong annotation name and right annotation elements
Author(s)
Weibin Huang<654751191@qq.com>
Examples
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## This is a simulative process and available only with CORRECT VARIABLES
anno.abnormal <- list(
"ENSG00000248993" = "XXbac-BPG181M17.5",
"PTPN20A" = "PTPN20",
"LRRC33" = "NRROS",
"C10orf54" = "VSIR",
"EMR1" = "ADGRE1",
"1-Mar"= "MARCH1",
"FAIM3"="FCMR",
"ADORA3"= "TMIGD3"
)
ppi2 <- AnnotateStringPPI(ppi,anno.abnormal)
shijianasdf/BasicBioinformaticsAnalysisFromZhongShan documentation built on Jan. 3, 2020, 10:08 p.m.
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Description Usage Arguments Author(s) Examples
View source: R/Anno_AnnotateStringPPI.R
Description
Re-annotation for ppi network from STRING web
Usage
1 | AnnotateStringPPI(ppi, anno.abnormal)
|
Arguments
ppi |
a data frame from "... as simple tabular text output" in string PPI network analysis |
anno.abnormal |
a list with wrong annotation name and right annotation elements |
Author(s)
Weibin Huang<654751191@qq.com>
Examples
1 2 3 4 5 6 7 8 9 10 11 12 | ## This is a simulative process and available only with CORRECT VARIABLES
anno.abnormal <- list(
"ENSG00000248993" = "XXbac-BPG181M17.5",
"PTPN20A" = "PTPN20",
"LRRC33" = "NRROS",
"C10orf54" = "VSIR",
"EMR1" = "ADGRE1",
"1-Mar"= "MARCH1",
"FAIM3"="FCMR",
"ADORA3"= "TMIGD3"
)
ppi2 <- AnnotateStringPPI(ppi,anno.abnormal)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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