AnnotateStringPPI: Re-annotation for ppi network from STRING web

Description Usage Arguments Author(s) Examples

View source: R/Anno_AnnotateStringPPI.R

Description

Re-annotation for ppi network from STRING web

Usage

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AnnotateStringPPI(ppi, anno.abnormal)

Arguments

ppi

a data frame from "... as simple tabular text output" in string PPI network analysis

anno.abnormal

a list with wrong annotation name and right annotation elements

Author(s)

Weibin Huang<[email protected]>

Examples

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## This is a simulative process and available only with CORRECT VARIABLES
anno.abnormal <- list(
"ENSG00000248993" = "XXbac-BPG181M17.5",
"PTPN20A" = "PTPN20",
"LRRC33" = "NRROS",
"C10orf54"  = "VSIR",
"EMR1" = "ADGRE1",
"1-Mar"= "MARCH1",
"FAIM3"="FCMR",
"ADORA3"= "TMIGD3"
)
ppi2 <- AnnotateStringPPI(ppi,anno.abnormal)

shijianasdf/BasicBioinformaticsAnalysisFromZhongShan documentation built on Jan. 3, 2020, 10:08 p.m.