BI_FPKMtoTPM: FPKM value converted to TPM value

In shijianasdf/BasicBioinformaticsAnalysisFromZhongShan: Launch Usual Clinical tool for Kind Yield

Description

FPKM value converted to TPM value

Usage

  FPKMtoTPM(mt)

Arguments

mt	data frame or matrix.It always be a gene expression matrix.

Value

a matrix contain TPM Values

Author(s)

Weibin Huang

See Also

data(fpkm)

Examples

data(fpkm) # fpkm <- assay(data)
tpm <- FPKMtoTPM(fpkm)
tpm[1,1] == (fpkm[1,1]/sum(as.numeric(as.character(fpkm[,1]))))*(10^6) ## T
colSums(tpm)/nrow(tpm) # a value that should be a repeats of constant values.

shijianasdf/BasicBioinformaticsAnalysisFromZhongShan documentation built on Jan. 3, 2020, 10:08 p.m.