Description Usage Arguments Value Author(s) See Also Examples
View source: R/experiment_testPrimer.R
Give Mutiple primers,test the amplication sequence and whether cross different exons
1 2 | testPrimer(forward, reverse, path.transcript.fa = NULL,
path.exon.fa = NULL, verbose = T)
|
forward |
a name vector of forward primers |
reverse |
a name vector of reverse primers |
path.transcript.fa |
the path of transcript(cDNA) fa file.if primers are multiple,it is recommanded to set |
path.exon.fa |
the path of exons fa file.if primers are multiple,it is recommanded to set |
A luckyList
Weibin Huang<654751191@qq.com>
XStringSet-io
;XVector-class
;matchPattern
;testPrimer1
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 | library(lucky)
forward = c(DSCR8="GGGTGGCAAAAAGAGAAGATGG",
DSCR8 = "CGTCTTGTCCACTCGTTTCTG",
DSCR8 = "AAATAGGCTTCCCACTTGGC",
DSCR8 = "GGGTGGCAAAAAGAGAAGATGG")
reverse = c(DSCR8="GGTCCAGGCTCCTTCATTTTTG",
DSCR8 = "GGCATGTTCTAAATGGCAGCTC",
DSCR8 = "CCAGGCTCCTTCATTTTTGCTC",
DSCR8 = "GGTCCAGGCTCCTTCATTTTTG")
res <- testPrimer(forward,reverse)
library(lucky)
forward = c(FASN = "ACAGCGGGGAATGGGTACT",
SCD = "TCATAATTCCCGACGTGGCT",
PPARG = "GGGATCAGCTCCGTGGATCT",
ACACA = "TCACACCTGAAGACCTTAAAGCC",
ACTB = "CATGTACGTTGCTATCCAGGC",
TNF = "TGGCGTGGAGCTGAGAGATA",
IL6 = "GAGTAGTGAGGAACAAGCCAGA",
PCK1 = "AAGGTGGGGACGTTCAGAATC",
G6PC = "CACTTCCGTGCCCCTGATAA")
reverse = c(FASN = "GACTGGTACAACGAGCGGAT",
SCD = "CCCAGAAATACCAGGGCACA",
PPARG = "TGCACTTTGGTACTCTTGAAGTT",
ACACA = "AGCCCACACTGCTTGTACTG",
ACTB = "CTCCTTAATGTCACGCACGAT",
TNF = "TGATGGCAGAGAGGAGGTTG",
IL6 = "AAGCTGCGCAGAATGAGATGA",
PCK1 = "ATGGTTCCCTGCCTCATTCC",
G6PC = "TAGTATACACCTGCTGTGCCC")
res <- testPrimer(forward,reverse)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.