ProteinAnnotation: Get protein annotation from gpl file
In shijianasdf/BasicBioinformaticsAnalysisFromZhongShan: Launch Usual Clinical tool for Kind Yield
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/Anno_ProteinAnnotation.R
Description
Get protein annotation from gpl file
Usage
1
2
ProteinAnnotation(gtf.path, gene.col = "gene_id",
protein.col = "protein_id")
Arguments
gtf.path
the path of .gtf
gene.col
the colname of gene_id(ENSG)
protein.col
the colname of protein_id(ENSP)
Value
a data frame of annotation for protein(ENSP id)
Author(s)
Weibin Huang<654751191@qq.com>
Examples
1
2
gtf.path='E:/RCloud/database/DataDownload/annotation/unzip data/gencode.v28.chr_patch_hapl_scaff.annotation.gtf'
ProteinAnnotation(gtf.path)
shijianasdf/BasicBioinformaticsAnalysisFromZhongShan documentation built on Jan. 3, 2020, 10:08 p.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/Anno_ProteinAnnotation.R
Description
Get protein annotation from gpl file
Usage
1 2 | ProteinAnnotation(gtf.path, gene.col = "gene_id",
protein.col = "protein_id")
|
Arguments
gtf.path |
the path of .gtf |
gene.col |
the colname of gene_id(ENSG) |
protein.col |
the colname of protein_id(ENSP) |
Value
a data frame of annotation for protein(ENSP id)
Author(s)
Weibin Huang<654751191@qq.com>
Examples
1 2 | gtf.path='E:/RCloud/database/DataDownload/annotation/unzip data/gencode.v28.chr_patch_hapl_scaff.annotation.gtf'
ProteinAnnotation(gtf.path)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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