Description Usage Arguments Author(s) See Also Examples
View source: R/BI_exampleLassoCox.R
Visualize and analysis of cox.optimized2 result by giving a specified seed
1 2 3 4 | exampleLassoCox(expr.matrix, design, select, event.status, event.time,
event.lower, k = 10, seed, optimize.method = "min", plot.label = T,
plot.lwd = 2, line.lty = 3, line.lwd = 2, line.col = "blue",
verbose = T, save.file = T, names = "love")
|
expr.matrix |
gene expression with sample cols and genes/markers rows. |
design |
design object with characters cols and sample rows. |
select |
intersting genes/markers |
event.status |
a vector of event status names |
event.time |
a vector of event time names |
event.lower |
the cutoff(>) ofevent.time |
k |
number of folds.Default is 10. |
seed |
a good example from the result of |
optimize.method |
Default is "min".You can also use "1se" |
plot.label |
whether to show labels in the plot of glmnet object |
plot.lwd |
the line width of the plot of glmnet object |
line.lty |
the line type of the cutoff line in the plot of glmnet object |
line.lwd |
the line width of the cutoff line in the plot of glmnet object |
line.col |
the line color of the cutoff line in the plot of glmnet object |
verbose |
whether to do a plot report |
save.file |
whether to save plot |
names |
part name of the saved file |
Weibin Huang<654751191@qq.com>
1 | ## This is a simulative process and available only with CORRECT VARIABLES
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