exampleLassoCox: Visualize and analysis of cox.optimized2 result by giving a...

In shijianasdf/BasicBioinformaticsAnalysisFromZhongShan: Launch Usual Clinical tool for Kind Yield

Description

Visualize and analysis of cox.optimized2 result by giving a specified seed

Usage

exampleLassoCox(expr.matrix, design, select, event.status, event.time,
  event.lower, k = 10, seed, optimize.method = "min", plot.label = T,
  plot.lwd = 2, line.lty = 3, line.lwd = 2, line.col = "blue",
  verbose = T, save.file = T, names = "love")

Arguments

expr.matrix	gene expression with sample cols and genes/markers rows.
design	design object with characters cols and sample rows.
select	intersting genes/markers
event.status	a vector of event status names
event.time	a vector of event time names
event.lower	the cutoff(>) ofevent.time
k	number of folds.Default is 10.
seed	a good example from the result of uniqueModel
optimize.method	Default is "min".You can also use "1se"
plot.label	whether to show labels in the plot of glmnet object
plot.lwd	the line width of the plot of glmnet object
line.lty	the line type of the cutoff line in the plot of glmnet object
line.lwd	the line width of the cutoff line in the plot of glmnet object
line.col	the line color of the cutoff line in the plot of glmnet object
verbose	whether to do a plot report
save.file	whether to save plot
names	part name of the saved file

Author(s)

Weibin Huang<[e-mail]>

See Also

glmnet;cv.glmnet;

Examples

## This is a simulative process and available only with CORRECT VARIABLES

shijianasdf/BasicBioinformaticsAnalysisFromZhongShan documentation built on Jan. 3, 2020, 10:08 p.m.