ScreenGenes: DEGs screening via common t-test

In shijianasdf/BasicBioinformaticsAnalysisFromZhongShan: Launch Usual Clinical tool for Kind Yield

Description

DEGs screening via common t-test

Usage

ScreenGenes(object, design, contrast.col, contrast.level = c("tumor",
  "normal"), contrast.control = c("normal"), cutoff.p = 0.05,
  verbose = F)

Arguments

object	DesignList or expression matrix
design	design object.If object is DesignList,it can be NULL
contrast.col	the colnames of contrast.Like "N.status"
verbose	whether report the process

Value

data frame of DEGs information

Author(s)

Weibin Huang<[e-mail]>

See Also

DESeq1.

Examples

## This is a simulative process and available only with CORRECT VARIABLES
res <- ScreenGenes(DesignEset,
                   contrast.level = c("tumor","normal"),
                   contrast.control = c("normal"),
                   cutoff.p=0.05)

shijianasdf/BasicBioinformaticsAnalysisFromZhongShan documentation built on Jan. 3, 2020, 10:08 p.m.