Description Usage Arguments Author(s) See Also Examples
View source: R/BI_testBatchEffect.R
testBatchEffect help test potencial and specified fators that may bring batch effect base on DESeq2 pipeline
1 2 | testBatchEffect(SigObject, design = NULL, candidate = c("gender",
"diognosis.year"), n.sv = NULL, names = "love", report = T)
|
SigObject |
the result of |
design |
design object.If |
candidate |
the candidate variables you selectd like years or days |
names |
the name of saved file |
report |
whether to show plot reports |
Weibin Huang<654751191@qq.com>
1 2 3 4 5 6 7 8 9 | ## This is a simulative process and available only with CORRECT VARIABLES
coldata <- as.data.frame(colData(SigObject$dds))
colnames(coldata)
candidate=c("gender","diognosis.year","pT")
t.be <- testBatchEffect(SigObject,
candidate,
names = "test")
View(t.be)
View(t.be$Unknown$SigTest)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.