Description Usage Arguments Value Author(s) Examples
View source: R/Anno_SeqmanBefore.R
When we want to annotate a chip with probe sequence,Seqman software is a good choice.Before use Seqman,a probe information should be prepared,which SeqmanBefore() can help do.
1 2 | SeqmanBefore(eset, probe.id.col = "ID", sequence.col = "SEQUENCE",
save.file = T, names = "test1")
|
eset |
an eset object containing feature data. |
probe.id.col |
the colname of the probe id |
sequence.col |
the colname of the sequence information |
save.file |
whether save results as rda |
names |
part of saved file name |
a .txt file containing probe ids and sequeces.
Weibin Huang<654751191@qq.com>
1 2 3 4 5 6 7 8 | load("E:/RCloud/database/DataDownload/GEOqueryDownload/GSE17154/GSE17154_rawEset.rda")
probe.id.col="ID"
sequence.col = "SEQUENCE"
test1 = SeqmanBefore(eset,
probe.id.col,
sequence.col,
save.file=T,
names = "test1")
|
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