Description Usage Arguments Details Value Author(s) Examples
View source: R/BI_FastCeRNA_edge2.R
a simple method for ceRNA network edge/node selection
1 2 3 4 | FastCeRNA_edge2(object, lncRNA.col = "lncRNAs", pcRNA.col = "Genes",
miRNA.col = "miRNAs", pmcor = "pmcor", pmcor.Pvalue = "corPValue",
lmcor = "lmcor", plcor = "plcor", cutoff = list(pl = 0.5, lm = 0.2,
pm = 0.2), filter = T, verbose = T)
|
object |
the result of |
lncRNA.col |
colnames of lncRNA |
pcRNA.col |
colnames of protein-coding RNA, |
miRNA.col |
colnames of miRNA |
pmcor |
the col of protein-coding and miRNA correlation |
pmcor.Pvalue |
the p value of pmcor |
lmcor |
the col of lncRNA and miRNA correlation |
plcor |
the col of protein-coding and miRNA correlation |
cutoff |
the cutoff of correlation.Default is |
filter |
whether to do filter |
verbose |
whether do verbose report |
FastCeRNA_edge2 select ceRNA network:positive lnc-miRNA correaltion;miR negative.
a data frame
Weibin Huang<654751191@qq.com>
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | ## This is a simulative process and available only with CORRECT VARIABLES
load("E:/iProjects/LM_WGCNA/data/LM_WGCNA_02C/rda/lm_ceRNA.rda")
df <- FastCeRNA_edge2(object)
## other parameters
colnames(lm_ceRNA)
object = lm_ceRNA
lncRNA.col = "lncRNAs"
pcRNA.col = "Genes"
miRNA.col = "miRNAs"
pmcor = "pmcor"
lmcor="lmcor"
plcor = "plcor"
filter = T
verbose = T
|
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