FastCeRNA: easy ceRNA network via GDCRNATools::gdcCEAnalysis

In shijianasdf/BasicBioinformaticsAnalysisFromZhongShan: Launch Usual Clinical tool for Kind Yield

Description

easy ceRNA network via GDCRNATools::gdcCEAnalysis

Usage

FastCeRNA(gene.counts, miRNA.counts, matrix.type = "counts",
  select = NULL, design, deMIR = NULL, lnc.targets = "starBase",
  pc.targets = "starBase", save.path = "ceRNA", names = "love")

Arguments

gene.counts	the raw counts matrix of mRNA and lncRNA
miRNA.counts	the raw counts matrix of miRNA
matrix.type	the type of expression matrix.Default is "counts".If you have a normalized matrix,please set it "normalized".
design	a design object
deMIR	differencial expression miRNAs
lnc.targets	a list with lcnRNA ENSEMBL names and miRNAs symbol elements.Or "starBase"
pc.targets	a list with protein-coding RNA(mRNA) ENSEMBL names and miRNAs symbol elements.
save.path	the space of the save file.Default is "WGCNA"
names	part of saved files name

Author(s)

Weibin Huang<[e-mail]>

See Also

gdcCEAnalysis.

shijianasdf/BasicBioinformaticsAnalysisFromZhongShan documentation built on Jan. 3, 2020, 10:08 p.m.