BI_result.lassoModel: Get results from lasso model function

In shijianasdf/BasicBioinformaticsAnalysisFromZhongShan: Launch Usual Clinical tool for Kind Yield

Description

Get results from lasso model function

Usage

result.lassoModel(lassoModel,
                  position = c(2,1,1),
                  names = c("TTR","DFS","OS"),
                  dig = 5)
getModelMatrix(expr.matrix,
               design,
               model,
               cut.off = NULL,
               position = 1)

Arguments

1.result.lassoModel:

lassoModel	the result from cox.optimized2 and bootstrap.lasso series
position	the position of one model you want
names	the name of one model like DFS
dig	digits of correlation of model genes

2.getModelMatrix:

expr.matrix	a log scale expression matrix
design	a design object
model	result from result.lassoModel
cut.off	Default is NULL.If you set a numeric,it would produce a score status column
position	the position of one model you want

Author(s)

Weibin Huang<[e-mail]>

Examples

## This is a simulative process and NOT RUN

model <- result.lassoModel(l1,
                           position = 1,
                           names = "ROC",
                           dig = 5)
View(model[[1]])

## get model matrix
model.mt <- getModelMatrix(expr.matrix = data.fpkm,
                           design = design.train,
                           model = model)
View(model.mt$metadata)

shijianasdf/BasicBioinformaticsAnalysisFromZhongShan documentation built on Jan. 3, 2020, 10:08 p.m.