getAnnotation: Get annotation from a gtf annotation file

In shijianasdf/BasicBioinformaticsAnalysisFromZhongShan: Launch Usual Clinical tool for Kind Yield

Description

get annotation from a gtf annotation file.

Usage

getAnnotation(gtf.path, select.col = NULL, Newcolnames = NULL,
  control.id = NULL)

Arguments

gtf.path	the path of .gtf
select.col	the selected colnames.Default is "gene_id","gene_name" and "gene_type"
Newcolnames	the new colnames.Default is "ENSEMBL","SYMBOL","gene_type"
control.id	the onlyone id colname

Author(s)

Weibin Huang<[e-mail]>

Examples

getAnnotation(gtf.path,
              select.col=NULL,
              Newcolnames=NULL,
              control.id=NULL)
save(gtf.annotation,file="gtf.annotation.rda")

shijianasdf/BasicBioinformaticsAnalysisFromZhongShan documentation built on Jan. 3, 2020, 10:08 p.m.