ModuleSurv: Explore relationship between Modules and survival in...

In shijianasdf/BasicBioinformaticsAnalysisFromZhongShan: Launch Usual Clinical tool for Kind Yield

Description

ModuleSurv explores relationship between Modules and survival in FastWGCNA pipeline.

Usage

ModuleSurv(object, design, time, status, digits = 3,
  save.path = "WGCNA", names = "love")

Arguments

object	the result of FastWGCNA.
design	a trait-design object
time	the time colname in design object
status	the status colname in design object
digits	integer indicating the number of decimal places (round) or significant digits (signif) to be used. Negative values are allowed (see ‘Details’).
save.path	the space of the save file.Default is "WGCNA"
names	part of saved files name

Details

I.Multiple time and status is supported. II.If object is a ME matrix,then you must make the row of ME matrix as the same as design.Pay more attention to ModuleSurvValid

Value

LuckyWGCNA object

Author(s)

Weibin Huang<[e-mail]>

See Also

FastWGCNA.

Examples

## This is a simulative process and available only with CORRECT VARIABLES
library(lucky)
object = wgcna;rm(wgcna);gc()
design = rna.design.tumor
time = c("OS.time","DFS.time")
status = c("OS.status","DFS.status")
result_MS <- ModuleSurv(object,
                        design,
                        time,status,
                        digits = 3,
                        height = 10,width = 8,
                        save.path = "WGCNA-test",
                        names = "love")

shijianasdf/BasicBioinformaticsAnalysisFromZhongShan documentation built on Jan. 3, 2020, 10:08 p.m.