Description Usage Arguments Value Author(s) See Also Examples
View source: R/BI_FastCeRNA_edge.R
Get miRNA-lncRNA-mRNA edge data after FastCeRNA
1 2 | FastCeRNA_edge(object, lncRNA.col = "lncRNAs", pcRNA.col = "Genes",
miRNA.col = "miRNAs", Cor.col = "cor")
|
object |
the result of |
lncRNA.col |
colnames of lncRNA |
pcRNA.col |
colnames of protein-coding RNA, |
miRNA.col |
colnames of miRNA |
Cor.col |
colnames of Pearson corelation |
a data frame of miRNA-lncRNA-mRNA edge data
Weibin Huang<654751191@qq.com>
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | ## load data
load("E:/iProjects/LM_WGCNA/data/LM_WGCNA_01A/rda/lm_ceRNA.rda")
load("E:/iProjects/LM_WGCNA/data/LM_WGCNA_01A/rda/lm_moduleGenes.rda")
## filter
lm_ceRNA_hubModules <- dplyr::filter(lm_ceRNA,Genes %in% as.character(moduleGenes),hyperPValue <= 0.05)
## Get edge data
ceRNA_edge <- FastCeRNA_edge(object = lm_ceRNA_hubModules,
lncRNA.col = "lncRNAs",
pcRNA.col = "Genes",
miRNA.col = "miRNAs",
Cor.col = "cor")
## Or easier way
ceRNA_edge <- FastCeRNA_edge(lm_ceRNA_hubModules)
View(ceRNA_edge)
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