BI_result.DEG: Get a summary result from multiple DEGList

In shijianasdf/BasicBioinformaticsAnalysisFromZhongShan: Launch Usual Clinical tool for Kind Yield

Description

result.DEG help get a summary result from multiple DEGList

Usage

rd <- result.DEG(DEGList,
                 logFC.list,
                 select,
                 filter=T)

Arguments

DEGList	a list of result from DESeq1 or edgeR1
logFC.list	a list of logFC colnames
select	selected markers or genes
filter	whether to do a same trend filter.If you want all results,set FALSE to filter

Author(s)

Weibin Huang<[e-mail]>

Examples

## This is a simulative process and NOT RUN

# parameters
DEGList <- list(DESeq2 = train.DESeqList,edgeR = train.edgeRList)
logFC.list <- list(DESeq2 = "log2FoldChange",edgeR = "logFC")
select <-  intersect(train.DESeqList$siggenes,train.edgeRList$siggenes)

# result
resultDEG <- result.DEG(DEGList,
                        logFC.list,
                        select,
                        filter = T)

shijianasdf/BasicBioinformaticsAnalysisFromZhongShan documentation built on Jan. 3, 2020, 10:08 p.m.