SeqmanAfter: extra information from match_probe.txt from Seqman software

In shijianasdf/BasicBioinformaticsAnalysisFromZhongShan: Launch Usual Clinical tool for Kind Yield

Description

In chip annotation,after Seqman process,there is a file with patterns like "match_probe",and SeqmanAfter() help to extra information from it.

Usage

SeqmanAfter(path.match.probe, information.col = "trans_id",
  save.file = T, names = "test1")

Arguments

path.match.probe	the match_probe file created by Seqman software from Sangerbox.
information.col	annotation information colname
save.file	whether save results as rda
names	part of saved file name.

Value

a data frame containing chip annotation information.

Author(s)

Weibin Huang<[e-mail]>

Examples

path.match.probe <- "E:/RCloud/database/DataDownload/GEOqueryDownload/GSE17154/GPL6699_match_probe.txt"
information.col="trans_id"
SeqmanAfter(path.match.probe,
            information.col,
            save.file=T,
            names ="GPL6699")

shijianasdf/BasicBioinformaticsAnalysisFromZhongShan documentation built on Jan. 3, 2020, 10:08 p.m.