DADA2/forGithub_1.R
In shouguog/cellcallEXT: inference of intercellular networks from single-cell transcriptomics
#R4.0.4
rm(list=ls())
library(Seurat)
library(tidyverse)
library(cellcallEXT)
load("../ourDataSeuratAfterPCAtSNE.RData")
set.seed(888); indexCells<-sample(1:184971, 10000)
countData<-seuratObj@assays$RNA@counts[, indexCells]
metaData<-seuratObj@meta.data[indexCells,]
save(countData, metaData, file = "DADA2Data.RData")
shouguog/cellcallEXT documentation built on Jan. 2, 2022, 8:13 p.m.
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#R4.0.4
rm(list=ls())
library(Seurat)
library(tidyverse)
library(cellcallEXT)
load("../ourDataSeuratAfterPCAtSNE.RData")
set.seed(888); indexCells<-sample(1:184971, 10000)
countData<-seuratObj@assays$RNA@counts[, indexCells]
metaData<-seuratObj@meta.data[indexCells,]
save(countData, metaData, file = "DADA2Data.RData")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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