Files in shuyuzheng/synergyfinder
Calculate and Visualize Synergy Scores for Drug Combinations
.Rbuildignore
.gitignore
.travis.yml
COPYING
DESCRIPTION
NAMESPACE
R/.DS_Store
R/NCATS_screening_data.R
R/ONEIL_screening_data.R
R/Reshape_data.R
R/calculate_sensitivity_score.R
R/calculate_synergy_score.R
R/fit_dose_response_model.R
R/mathews_screening_data.R
R/plot_barometer.R
R/plot_dose_response_curve.R
R/plot_multi_drugs.R
R/plot_sensitivity_synergy.R
R/plot_two_drugs.R
R/plot_wrapper.R
README.md
data-raw/NCATS_10023.R
data-raw/NCATS_10023/calc.csv
data-raw/NCATS_10023/metadata.csv
data-raw/NCATS_10023/responses.csv
data/NCATS_screening_data.rda
data/ONEIL_screening_data.rda
data/mathews_screening_data.rda
inst/CITATION
inst/NEWS
man/Bliss.Rd
man/CalculateCSS.Rd
man/CalculateIC50.Rd
man/CalculateRI.Rd
man/CalculateSensitivity.Rd
man/CalculateSynergy.Rd
man/CorrectBaseLine.Rd
man/DimensionReduction.Rd
man/ExtractSingleDrug.Rd
man/FindModelPar.Rd
man/FindModelType.Rd
man/FitDoseResponse.Rd
man/GenerateSurface.Rd
man/HSA.Rd
man/HighlightBarPlot.Rd
man/ImputeIC50.Rd
man/Loewe.Rd
man/NCATS_screening_data.Rd
man/ONEIL_screening_data.Rd
man/Plot2DrugContour.Rd
man/Plot2DrugHeatmap.Rd
man/Plot2DrugSurface.Rd
man/PlotBarometer.Rd
man/PlotDoseResponse.Rd
man/PlotDoseResponseCurve.Rd
man/PlotMultiDrugBar.Rd
man/PlotMultiDrugSurface.Rd
man/PlotSensitivitySynergy.Rd
man/PlotSynergy.Rd
man/PredictResponse.Rd
man/ReshapeData.Rd
man/ZIP.Rd
man/dot-AdjustColumnName.Rd
man/dot-Bootstrapping.Rd
man/dot-Distance.Rd
man/dot-ExtendedScores.Rd
man/dot-Extract2DrugPlotData.Rd
man/dot-ExtractMultiDrugPlotData.Rd
man/dot-Own_log.Rd
man/dot-Own_log2.Rd
man/dot-PredictResponseFromModel.Rd
man/dot-Pt2mm.Rd
man/dot-RoundValues.Rd
man/dot-ScoreCurve.Rd
man/dot-ScoreCurve_L4.Rd
man/dot-SolveExpDoesL4.Rd
man/dot-SolveExpDoesLL4.Rd
man/dot-SolveExpDose.Rd
man/dot-SolveLoewe.Rd
man/mathews_screening_data.Rd
vignettes/Dose_Response_Matrix.svg
vignettes/User_tutorual_of_the_SynergyFinder_plus.Rmd
vignettes/ZIP_Synergy_Score.svg
vignettes/canertinib_ibrutinib_adjusted_dose_response_block_2.png
vignettes/canertinib_ibrutinib_synergy_2_ZIP_2D.png
vignettes/fig2.png
vignettes/ispinesib_ibrutinib_adjusted_dose_response_block_1.png
vignettes/ispinesib_ibrutinib_synergy_1_ZIP_2D.png
vignettes/multi_drug_dose_response.svg
vignettes/multi_drug_zip_score.svg
vignettes/ri.png
