API for smorabit/hdWGCNA
hdWGCNA

Global functions
AssignTFRegulons	Man page Source code
AvgModuleExpr	Man page Source code
BinPseudotime	Man page Source code
CheckSeurat5	Man page Source code
CheckWGCNAName	Man page Source code
ComputeModuleEigengene	Man page Source code
ConstructMetacells	Man page Source code
ConstructMetaspots	Man page Source code
ConstructNetwork	Man page Source code
ConstructPseudobulk	Man page Source code
ConstructTFNetwork	Man page Source code
DimPlotMetacells	Man page Source code
DoHubGeneHeatmap	Man page Source code
EnrichrBarPlot	Man page Source code
EnrichrDotPlot	Man page Source code
FindAllDMEs	Man page Source code
FindDMEs	Man page Source code
FindDifferentialRegulons	Man page Source code
FindMajorIsoforms	Man page Source code
GetActiveWGCNA	Man page Source code
GetActiveWGCNAName	Man page Source code
GetAvgModuleExpr	Man page Source code
GetDatExpr	Man page Source code
GetDegrees	Man page Source code
GetEnrichrRegulonTable	Man page Source code
GetEnrichrTable	Man page Source code
GetHubGenes	Man page Source code
GetMELoadings	Man page Source code
GetMEs	Man page Source code
GetMetacellObject	Man page Source code
GetMetacellParams	Man page Source code
GetModulePreservation	Man page Source code
GetModuleScores	Man page Source code
GetModuleTraitCorrelation	Man page Source code
GetModuleUMAP	Man page Source code
GetModules	Man page Source code
GetMotifMatrix	Man page Source code
GetMotifOverlap	Man page Source code
GetMotifScores	Man page Source code
GetMotifTargets	Man page Source code
GetMotifs	Man page Source code
GetMultiExpr	Man page Source code
GetNetworkData	Man page Source code
GetPFMList	Man page Source code
GetPowerTable	Man page Source code
GetRegulonScores	Man page Source code
GetTFEval	Man page Source code
GetTFNetwork	Man page Source code
GetTFRegulons	Man page Source code
GetTFTargetGenes	Man page Source code
GetTOM	Man page Source code
GetWGCNAGenes	Man page Source code
GetWGCNAParams	Man page Source code
HubGeneNetworkPlot	Man page Source code
MetacellsByGroups	Man page Source code
MetaspotsByGroups	Man page Source code
ModuleConnectivity	Man page Source code
ModuleCorrNetwork	Man page Source code
ModuleCorrelogram	Man page Source code
ModuleEigengenes	Man page Source code
ModuleExprScore	Man page Source code
ModuleFeaturePlot	Man page Source code
ModuleNetworkPlot	Man page Source code
ModulePreservation	Man page Source code
ModulePreservationNetRep	Man page Source code
ModuleRadarPlot	Man page Source code
ModuleRegulatoryHeatmap	Man page Source code
ModuleRegulatoryNetwork	Man page Source code
ModuleRegulatoryNetworkPlot	Man page Source code
ModuleTopologyBarplot	Man page Source code
ModuleTopologyHeatmap	Man page Source code
ModuleTraitCorrelation	Man page Source code
ModuleUMAPPlot	Man page Source code
MotifOverlapBarPlot	Man page Source code
MotifScan	Man page Source code
NormalizeMetacells	Man page Source code
OverlapBarPlot	Man page Source code
OverlapDotPlot	Man page Source code
OverlapModulesDEGs	Man page Source code
OverlapModulesMotifs	Man page Source code
PlotDMEsLollipop	Man page Source code
PlotDMEsVolcano	Man page Source code
PlotDendrogram	Man page Source code
PlotDifferentialRegulons	Man page Source code
PlotKMEs	Man page Source code
PlotLollipop	Man page Source code
PlotModulePreservation	Man page Source code
PlotModulePreservationLollipop	Man page Source code
PlotModuleTraitCorrelation	Man page Source code
PlotModuleTrajectory	Man page Source code
PlotSoftPowers	Man page Source code
ProjectModules	Man page Source code
ReassignModules	Man page Source code
RegulonBarPlot	Man page Source code
RegulonScores	Man page Source code
ResetModuleColors	Man page Source code
ResetModuleNames	Man page Source code
RunEnrichr	Man page Source code
RunEnrichrRegulons	Man page Source code
RunHarmonyMetacells	Man page Source code
RunModuleUMAP	Man page Source code
RunPCAMetacells	Man page Source code
RunUMAPMetacells	Man page Source code
ScaleMetacells	Man page Source code
SelectNetworkGenes	Man page Source code
SetActiveWGCNA	Man page Source code
SetAvgModuleExpr	Man page Source code
SetDatExpr	Man page Source code
SetDegrees	Man page Source code
SetEnrichrRegulonTable	Man page Source code
SetEnrichrTable	Man page Source code
SetMELoadings	Man page Source code
SetMEs	Man page Source code
SetMetacellObject	Man page Source code
SetMetacellParams	Man page Source code
SetModulePreservation	Man page Source code
SetModuleScores	Man page Source code
SetModuleTraitCorrelation	Man page Source code
SetModuleUMAP	Man page Source code
SetModules	Man page Source code
SetMotifMatrix	Man page Source code
SetMotifOverlap	Man page Source code
SetMotifScores	Man page Source code
SetMotifTargets	Man page Source code
SetMotifs	Man page Source code
SetMultiExpr	Man page Source code
SetNetworkData	Man page Source code
SetPFMList	Man page Source code
SetPowerTable	Man page Source code
SetRegulonScores	Man page Source code
SetTFEval	Man page Source code
SetTFNetwork	Man page Source code
SetTFRegulons	Man page Source code
SetWGCNAGenes	Man page Source code
SetWGCNAParams	Man page Source code
SetupForWGCNA	Man page Source code
TFNetworkPlot	Man page Source code
TestSoftPowers	Man page Source code
TestSoftPowersConsensus	Man page Source code
TransferModuleGenome	Man page Source code
check_inputs	Man page
corSparse	Man page Source code
scale01	Man page Source code
shuffle_points	Man page Source code
to_pseudobulk	Man page Source code
umap_theme	Man page Source code