export2cytoscape: Export results in cytoscape format
In spell098/rnaseq_app:

Description Usage Arguments Value Author(s) See Also Examples

Export results in cytoscape format

1 2	export2cytoscape(expr.matrix, results, threshold = 0.9, typeID = "ensembl_gene_id")

`expr.matrix`	A matrix of numeric values. Rows are genes, columns are samples
`results`	A topTable with only the genes considered significant (according to the p-value and logFC limits provided in the function results_topTable)
`threshold`	The lowest value of correlation to make the link considered significantly high
`typeID`	The type of ID used, e.g.

The results in cytoscape format

Simon J Pelletier

adjacency

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expr.matrix <- readRDS("data/expr_matrix_LGVD.rds")
results <- readRDS("data/results_LGVD.rds")
export2cytoscape <- export2cytoscape(expr.matrix,results[[1]])