exprToBind: Binds an expression matrix with colors corresponding to the...
In spell098/rnaseq_app:

Description Usage Arguments Value Author(s) See Also Examples

Binds an expression matrix with colors corresponding to the module of the elements in the rows (genes,transcripts...)

1	exprToBind(bnet, expr.matrix, typeID = "ensembl_gene_id")

`bnet`	A list of WGCNA results
`expr.matrix`	A matrix of expression values. Rows are genes, columns are samples
`typeID`	Type of IDs used as rows in the expression matrix.Default="ensembl_gene_id"

An expression matrix additonnal informations with two columns added as the first columns of the matrix. The columns are, in order:

module: Contain the module of the element (gene, transcript...)
ID: contain the IDs used afterwards to merge all of the additional annotations in subsequent operation in the pipeline

Simon J Pelletier

topTable

ggplot

bnet <- readRDS("data/bnet_LGVD.rds")
expr.matrix <- readRDS("data/expr_matrix_LGVD.rds")
typeID <- "ensembl_gene_id"
expr.toBind <- exprToBind(bnet,expr.matrix,typeID)