modules_summary: Returns the summary for a module

In spell098/rnaseq_app:

Description

Returns the summary for a module

Usage

modules_summary(results, expr.toBind)

Arguments

results	The results of a comparison between two groups.
expr.toBind	Expression data.matrix with supplemental colums: module and ID

Author(s)

Simon J Pelletier

See Also

phyper

Examples

results <- readRDS("data/results_LGVD.rds")
expr.matrix <- readRDS("data/expr_matrix_LGVD.rds")
bnet <- readRDS("data/bnet_LGVD.rds")
expr.toBind <- cbind(module=bnet$colors,ensembl_gene_id=rownames(expr.matrix),expr.matrix)
modulesTable <- modules_summary(results,expr.toBind)

spell098/rnaseq_app documentation built on May 30, 2019, 7:57 a.m.