signifRows: Select in an expression matrix only the rows with significant...

In spell098/rnaseq_app:

Description

Select in an expression matrix only the rows with significant elements (genes,transcripts...)

Usage

signifRows(expr.matrix, resultsSummary)

Arguments

expr.matrix	A matrix of standardized data. Columns = samples, rows = genes,transcripts,CpG...
resultsSummary	A matrix of data from every gene that is significanlty different

Value

The significant rows of the initial expression matrix between at least two groups. Columns = samples, rows = genes,transcripts,CpG...

Author(s)

Simon J Pelletier

See Also

topTable results_summary

Examples

expr.matrix <- readRDS("data/expr_matrix_LGVD.rds")
results <- readRDS("data/results_LGVD.rds")
topTable3 <- readRDS("data/topTable3_LGVD.rds")
resultsSummary <- results_summary(results,topTable3)

spell098/rnaseq_app documentation built on May 30, 2019, 7:57 a.m.