namesSelectedComparisons: Create a vector of the group membership for each sample

In spell098/rnaseq_app:

Description

Takes a data.frame with a single column containing strings, removes the whitespace of all strings and returns it as a vector

Usage

namesSelectedComparisons(namesTable)

Arguments

namesTable

data.frame with a single column containing group names

Value

A vector of the group membership for each sample.The name of each element is the initial name of the sample

Author(s)

Simon J Pelletier

Examples

gset <- getGEO('GSE61276', GSEMatrix =TRUE) #GSE61276 GSE12654
exprset <- gset[[1]]
comparisons <- comparisonsPheno(exprset)[[1]]
comparisonsTable <- comparisonsPheno(exprset)[[2]]
namesTable <- comparisonsTable
names2 <- namesSelectedComparisons(namesTable)

spell098/rnaseq_app documentation built on May 30, 2019, 7:57 a.m.